PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13518254g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 186aa    MW: 21532.1 Da    PI: 8.455
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13518254g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.36.8e-35114177265
                          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 
                                  +gkkdrhski+T++g RdRRvRls+++a++fFdLqd LGfdk+sktieWL+ ++  aikel ++
  Peinf101Ctg13518254g00001.1 114 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDILGFDKASKTIEWLFSKSYDAIKELSEN 177
                                  79**********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-35114178IPR005333Transcription factor, TCP
PROSITE profilePS5136934.883116174IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MFPQSNNDEP FLYTSKTFLE RSFTYDHHNP SSSSRHEDYP FLLNFPSPYL DNHELPLSQI  60
LPQQHQELEV IHHGMEAYPS KAHISGDTSA VEMSGEAKTS SKKRNLGATP RRRTGKKDRH  120
SKICTAQGVR DRRVRLSLHI ARKFFDLQDI LGFDKASKTI EWLFSKSYDA IKELSENMPQ  180
KGYFDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2742490.0JF274249.1 Petunia x hybrida TCP1 gene, complete cds.
GenBankKR0021030.0KR002103.1 Petunia x hybrida TCP transcription factor 1 (TCP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366063.11e-91PREDICTED: transcription factor TCP12
TrEMBLG0ZGI61e-132G0ZGI6_PETHY; Putative transcription factor
STRINGPGSC0003DMT4000193244e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-31TCP domain protein 12