PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13653255g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 258aa    MW: 27529.1 Da    PI: 8.4973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13653255g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.3e-085681227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                 kt+lC+ +     C++Gd+C+FaHg+
  Peinf101Ctg13653255g00001.1 56 KTRLCSKYNSPEGCRFGDKCHFAHGE 81
                                 8***********************96 PP
2zf-CCCH34.53.4e-11220243226
                                  -S---SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                  kt++C +fa+ G C +G++C+FaHg
  Peinf101Ctg13653255g00001.1 220 KTKICENFAK-GSCTFGEKCHFAHG 243
                                  89********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.427117IPR000571Zinc finger, CCCH-type
PfamPF146082.6414No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-135284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-85385IPR000571Zinc finger, CCCH-type
SMARTSM003560.0135481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5075482IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-65681IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.31E-15117196IPR004088K Homology domain, type 1
SMARTSM003221.0E-10124194IPR004087K Homology domain
PROSITE profilePS5008414.299125189IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.3E-15125194IPR004088K Homology domain, type 1
PfamPF000131.7E-10127191IPR004088K Homology domain, type 1
CDDcd001055.76E-14127189No hitNo description
SuperFamilySSF902291.7E-8217248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13217248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.098218245IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6218244IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8220243IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
TSGCPFGEGC HFLHYVPGGL KAVTQMLGSN PALPAASRNS AAPPSFPDGS SPPAVKTRLC  60
SKYNSPEGCR FGDKCHFAHG EWELGKRTAP LHEESHGMFQ MHGMYGNRPE TTPAGFGAAA  120
SFGSSATAKI SVDASLAGPI IGKGGVNSKQ ICHMTGAKLS IRDHESDPNL KNIELEGTID  180
QIEQASRMVR ELILSVRTAA APQMRNPGSR PTSNYKTKIK TKICENFAKG SCTFGEKCHF  240
AHGAEELREF GANKPQID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356452.11e-150PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-88C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4A4V51e-148A0A1S4A4V5_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A1U7YM221e-148A0A1U7YM22_NICSY; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009803026.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-52C3H family protein