PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13819509g00004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 243aa    MW: 26584.1 Da    PI: 5.2697
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13819509g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26060.64.4e-1951100150
                       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 
                                  +CaaCk+lrr+C + Cvlapyfp ++p kf ++h +FGasn++kll++ +
  Peinf101Ctg13819509g00004.1  51 PCAACKILRRRCIEMCVLAPYFPPTEPLKFTIAHSVFGASNIIKLLQKRN 100
                                  7*********************************************9854 PP
2DUF26060.74.1e-191221833899
                       DUF260  38 GasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                                  G +  + + ++lpe++r da++s+vyeA+ar+rdPvyG++g i++lq+q+ +l+aela+++ 
  Peinf101Ctg13819509g00004.1 122 GETPQILIFQELPEDQRADAVNSIVYEANARIRDPVYGCTGAISQLQKQITELQAELAKAQV 183
                                  5555566889************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.42150185IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-185199IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-17127182IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MECSDTTALT TSPTACSQYF PSSSSSLNSP GGSAGSTLAP SSPLSVVIMT PCAACKILRR  60
RCIEMCVLAP YFPPTEPLKF TIAHSVFGAS NIIKLLQKRN RSIYRLSRHF FKDHGISLNT  120
YGETPQILIF QELPEDQRAD AVNSIVYEAN ARIRDPVYGC TGAISQLQKQ ITELQAELAK  180
AQVEMLNAQS QNANLVSLIC MQMTQSGENN NTTVSPDDQQ AYGNTGLFLE DNSAYAAWEP  240
LWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37391872113LOB family transfactor Ramosa2.1
5ly0_B3e-37391872113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485630.12e-91PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-64LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4B9N04e-90A0A1S4B9N0_TOBAC; LOB domain-containing protein 1-like
STRINGXP_009588230.13e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-66LOB domain-containing protein 1