PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00001g24004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 177aa    MW: 20283.1 Da    PI: 9.3807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00001g24004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000595072123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C+++Fs+   L  H  +H
  Peinf101Scf00001g24004.1 50 FECKTCNRRFSSFQALGGHRASH 72
                              89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-848118No hitNo description
PfamPF139121.0E-124974IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2635077IPR007087Zinc finger, C2H2
SMARTSM003550.165072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139126.3E-1095120IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91296118IPR007087Zinc finger, C2H2
SMARTSM003550.596118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVAPSTKRER EEDNFYSITT MANYLMLLSR QANEHFDKNM NNNSSTSRVF ECKTCNRRFS  60
SFQALGGHRA SHKKPRLMGD LHNLQLFHEL PKRKTHECSI CGLEFAIGQA LGGHMRRHRA  120
VMNDKNVQAP DDQHAPVVKK ANGRRILSLD LNLTPLENDL EFDLRKSNTA PMVDCFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195KRKTH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004510.0AB000451.1 Petunia x hybrida mRNA for PEThy;ZPT2-5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762518.12e-76PREDICTED: zinc finger protein ZAT11-like
RefseqXP_016447026.12e-76PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD48e-42ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLP937131e-123P93713_PETHY; PEThy;ZPT2-5
STRINGXP_009762518.16e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-44C2H2 family protein