PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00011g01021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HB-other
Protein Properties Length: 515aa    MW: 55758.5 Da    PI: 5.0686
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00011g01021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.31.9e-061374655
                              S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                  Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                              +f++++++e+e+  +   +  p +e    LA+k            ++ +qV +WFqNrR+  
  Peinf101Scf00011g01021.1 13 RFNPSEVNEMEAILQAhkTAMPAREVLVALAEKFsssaersgkfVVQMKQVWNWFQNRRYAI 74
                              58999999999999954488899999999**99999999999999**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-10475IPR009057Homeodomain-like
SMARTSM003890.0022781IPR001356Homeobox domain
PROSITE profilePS500719.0371377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-81380IPR009057Homeodomain-like
CDDcd000866.25E-41375No hitNo description
PfamPF167191.2E-6180211IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGRPPSHGGP SFRFNPSEVN EMEAILQAHK TAMPAREVLV ALAEKFSSSA ERSGKFVVQM  60
KQVWNWFQNR RYAIRAKTAK SPGKFSSPPV PQREPAAVTP AKLSASPVPQ SDPSAVRIMP  120
QAPQPIPTPQ ATVKTMPQAP QSLPAASVPS VGRTASENSQ LEFEAKSARD GAWKSRFGLR  180
EGKEQALYFD AHVLDAQRRR HDVRGCRCRF LEIVPLRKVC RRPETDYRLQ QLNAEPPLKQ  240
QKIGNDPTTG STMKVDPPAE TTQKAQTESR IKPEEPTQKQ LAPEDTLKPG PNVVPMQLQK  300
SGTDSQTGNT LEPTQKQPAP EDIIKPGPNA APMQLQKSST ESLTGNTLEP TQKQPTPEDT  360
IKPGPNAAPM QLHESSTDSL TDNTLETPPS MEEMPKKPVP EMPEKPVADT AEVPQAEKEE  420
LHAESTDKAP AEVTENPSAK TTVEPPAELA ENPSAEATVE PPAEVADNPT AEITLEALAD  480
STSKLAEAPA EQSKAEEHVD AEAVVVSADN VNASL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754495e-80HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251685.11e-167PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
TrEMBLA0A1J6I1U81e-166A0A1J6I1U8_NICAT; Protein sawadee homeodomain-like 2
STRINGXP_009628382.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.35e-56sequence-specific DNA binding transcription factors;sequence-specific DNA binding