PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00013g06013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 192aa MW: 20804.5 Da PI: 5.9371

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00013g06013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.2	3.5e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++++++a+pe++r+++++sl++eA+ r+ +Pv Gavg++ Peinf101Scf00013g06013.1 4 SCNGCRVLRRRCSDNCTLRACLdglddPRAQGNATLFVSKFFGRSDLMSFISAVPENRRPALFKSLLFEACGRTVNPVTGAVGLL 88 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelallk 98 ++++++++q+++e++l++ Peinf101Scf00013g06013.1 89 STGNWHVCQKAVETVLAG 106 **********998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.324	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-26	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
NKMSCNGCRV LRRRCSDNCT LRACLDGLDD PRAQGNATLF VSKFFGRSDL MSFISAVPEN 60 RRPALFKSLL FEACGRTVNP VTGAVGLLST GNWHVCQKAV ETVLAGGNLR PVFSGILTPP 120 YTNSDDVSES FRGAWNKSES FVDASGPNFM DASNPWIGSE WSLCSETELS EVSLGLDSGN 180 GLKEPKLLNL FV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	3e-54	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224836.1	1e-99	PREDICTED: LOB domain-containing protein 38-like isoform X1
Swissprot	Q9SN23	3e-54	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A314KWD1	3e-98	A0A314KWD1_NICAT; Lob domain-containing protein 38
STRING	XP_009783238.1	1e-96	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-56	LOB domain-containing protein 38