PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00015g03003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 174aa MW: 19426.9 Da PI: 6.8966

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00015g03003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.7	1.5e-41	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasn++k+l+++p+++red+++slvyeAe+r++dPvyG++g i +lq+ Peinf101Scf00015g03003.1 11 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFANVHKVFGASNMIKILNEVPQDQREDTVNSLVYEAEVRLKDPVYGCIGAIASLQR 95 6********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 ++ +l+++l +++++ Peinf101Scf00015g03003.1 96 KMVELQHDLMVTRAH 110 ******9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.246	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.9E-41	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MKSNEPRSSS SCAACKFLKR RCTPNCQFAP YFRSDEPKKF ANVHKVFGAS NMIKILNEVP 60 QDQREDTVNS LVYEAEVRLK DPVYGCIGAI ASLQRKMVEL QHDLMVTRAH LAYYETKPSS 120 VSCSFLDYDP PSVNVTSAFM DFSASNGLVD SFTQNSFAMD HGGSTNEFGQ LPFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	6	138	6	131	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	6	138	6	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	1e-105	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567871.1	1e-109	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	5e-59	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1U8G962	1e-108	A0A1U8G962_CAPAN; LOB domain-containing protein 21-like
TrEMBL	A0A2G2X4X0	1e-108	A0A2G2X4X0_CAPBA; Uncharacterized protein
TrEMBL	A0A2G3CUD4	1e-108	A0A2G3CUD4_CAPCH; Protein LATERAL ORGAN BOUNDARIES
STRING	PGSC0003DMT400071281	1e-102	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-61	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]