PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00015g11003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26500.8 Da    PI: 4.5737
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00015g11003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.31.3e-1012381541
                              HHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                    SRF-TF 15 kRrngilKKAeELSvLCdaevaviifs 41
                              +  + + KKA+ELS+LCda+va++if 
  Peinf101Scf00015g11003.1 12 RKIQSLYKKAQELSTLCDAKVAIVIFK 38
                              4557899******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.914139IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-13883IPR002100Transcription factor, MADS-box
PfamPF003195.7E-10839IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDIVSERALF ARKIQSLYKK AQELSTLCDA KVAIVIFKNG ENTPILWPSQ AVAEEIARTF  60
RNTDEVQKVK KLVKLENYLL EKLQDRAEII RKKNEEMEME VLFNHLVVGK NINELDARQL  120
KGLKKLFEVK KAKVAERKKQ LNEEKQLNEE NEKNEDVQPI QDQPDQPSDQ PQPPLAADKN  180
VSEASTSFLE LLTNNQMFLE AMAASQDFGL GGESGTSSGP QEAGKDNDAG EENDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685080.0FJ168508.1 Petunia x hybrida type I MADS box transcription factor (MADSy3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB6DT601e-157B6DT60_PETHY; Type I MADS box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.13e-10AGAMOUS-like 92