PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00017g00013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 260aa    MW: 29298.6 Da    PI: 9.5063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00017g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.7e-1518105197
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 
                               ffkv+     ++s+ l++p  f+ + +g+k ++ tlt   +   +W+v++   ++++  +++ kGW eFv+ ++L++gDf vF++
  Peinf101Scf00017g00013.1  18 FFKVM--VPGFQSK-LTIPPAFCLKLKGEKSQNGTLT---TGKGTWNVEI--GQTKKDiIWFDKGWDEFVQIHNLRVGDFAVFEH 94 
                               78888..5566665.***********98877765665...56689*****..5555555*************************9 PP

                               -SSSEE..EEEEE CS
                        B3  85 dgrsefelvvkvf 97 
                                ++++f   v+++
  Peinf101Scf00017g00013.1  95 LDNMNF--SVTLL 105
                               998999..66665 PP
2B349.86.3e-161732481488
                               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                                 + +p +f+ ++ +   +++t++l+ +sg++  v l+++ ++++    +t+GWk F ++n+Lk+gD+++F+ld++ +
  Peinf101Scf00017g00013.1 173 PFMHIPMEFCHSNALF--QNTTIRLTGPSGETCPVSLRICSGGKTlyACMTTGWKVFFSSNKLKVGDICIFQLDRTrN 248
                               4589******999777..6679***************66555555888899*********************997633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.29315108IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-1816110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-1316106No hitNo description
Gene3DG3DSA:2.40.330.101.4E-1916110IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-1118108IPR003340B3 DNA binding domain
PfamPF023624.1E-1218104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-16156247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-16158246IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-5159252IPR003340B3 DNA binding domain
CDDcd100178.92E-15159246No hitNo description
PROSITE profilePS508639.982160260IPR003340B3 DNA binding domain
PfamPF023621.3E-13173249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MLSSSSRKED DLPISRRFFK VMVPGFQSKL TIPPAFCLKL KGEKSQNGTL TTGKGTWNVE  60
IGQTKKDIIW FDKGWDEFVQ IHNLRVGDFA VFEHLDNMNF SVTLLDSAGC GKKSLNLEDG  120
EQEVPSQVKK RKSADCSKEK RKPEGDGPHS QYVKGSSEFT ARIKEYNVRK RSPFMHIPME  180
FCHSNALFQN TTIRLTGPSG ETCPVSLRIC SGGKTLYACM TTGWKVFFSS NKLKVGDICI  240
FQLDRTRNDS TSITMDVRVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619629.11e-143PREDICTED: putative B3 domain-containing protein REM15
RefseqXP_018631640.11e-143PREDICTED: putative B3 domain-containing protein REM15
TrEMBLA0A1S3X5P51e-142A0A1S3X5P5_TOBAC; putative B3 domain-containing protein REM15 isoform X1
TrEMBLA0A1S4D0L21e-141A0A1S4D0L2_TOBAC; B3 domain-containing protein REM8-like
TrEMBLA0A1U7VZR11e-141A0A1U7VZR1_NICSY; B3 domain-containing protein REM8-like
STRINGXP_009619629.11e-143(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-21B3 family protein