PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00022g00010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 813aa    MW: 92908.1 Da    PI: 6.7371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00022g00010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.3e-05145193432
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPk.as...................k 32 
                               + n++E+r+R ++ + f+  r+ lP+ ++                   +
  Peinf101Scf00022g00010.1 145 KTNIIEQRYRTNVGELFAHVRKKLPWaDPkvvkevidvelykllgertA 193
                               45************************55455555555555555555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045581.4E-5417173IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045574.1E-13176268IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
SuperFamilySSF523749.57E-86275603No hitNo description
PfamPF007491.8E-116275594IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
CDDcd008071.02E-137275599No hitNo description
Gene3DG3DSA:3.40.50.6204.7E-39275344IPR014729Rossmann-like alpha/beta/alpha sandwich fold
TIGRFAMsTIGR004401.3E-185276810IPR004514Glutamine-tRNA synthetase
PRINTSPR009872.4E-7279291IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780282293IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009872.4E-7308321IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.101.7E-40348466No hitNo description
PRINTSPR009872.4E-7467477IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6204.7E-39469518IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.101.3E-30519596IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507153.61E-58597807IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039508.2E-44597788IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.105.7E-30605715IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.101.5E-29716806IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
FFGGAAAMVK EDNNAAALEL FLKIGLDDKT AKNTLANNKV TTNLTAVIHE AAVTGGCDRT  60
VGNLLYTVAT KYPANALNHR PTLLQYIVST KIKTPAQLEA AFTFLGATAS DNLKVHEFEE  120
ACGVGVEVSK DDIDRAVSEV FAEKKTNIIE QRYRTNVGEL FAHVRKKLPW ADPKVVKEVI  180
DVELYKLLGE RTAADNEKPV KKKKEKPVKA EDKSKVEETP APKPTEEELN PYSIFPAPEE  240
NYKVHTEVYF SDRPVLRACN SKELLEKHLT VTGRKVLTRF PPEPNGYLHI GHAKAMFVDF  300
GLAKERGGGC YLRFDDTNPE AEKKEYIDHI KEIVGWMGWE PFKITYTSDY FQDLYELAVE  360
LIRRGHAYVD HQTPEEVKEY REKKMNSPWR DRPIEESLRL FDEMKRGMID EGKATLRMKQ  420
DMQSDNFNMY DLIAYRIKAS FFFFCKQHFE FLFTPHPHAG DKWCIYPSYD YAHCIVDSLE  480
NITHSLCTLE FETRRASYYW LLDALGLYQP FVWEYSRLNV SNTVMSKRKL NRLVTEQWVD  540
GWDDPRLMTL AGLRRRGVTS TAINAFVRGI GITRSDCSMI HLSRLEYHVR EELNKTAPRT  600
MVVLNPLKVV ITNLEAGIVM DLDAKKWPEA PADDASSFYK IPFSRVVYIE RTDFRLKDSK  660
DYYGLAPGKS VLLRYAYPIK CTDVILADDK ETVLEIKAEY DPSKTIKPKG VLHWVAEPSP  720
GADPLKVEVR LFDRLFLSEN PAELDDWLGD LNPESKVVIP NAYAVPSVEK ASLGDRFQFE  780
RLGYFAVDRD STSEKLVFNR TVTLRDSYGK GGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.01781030798Glutamine--tRNA ligase
4ye6_A0.0178107775Glutamine--tRNA ligase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-87HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-87HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344143.10.0PREDICTED: glutamine--tRNA ligase
RefseqXP_010320758.10.0glutamine--tRNA ligase isoform X1
RefseqXP_016547952.10.0PREDICTED: glutamine--tRNA ligase isoform X2
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A1U8EL670.0A0A1U8EL67_CAPAN; glutamine--tRNA ligase isoform X2
TrEMBLA0A3Q7GEE90.0A0A3Q7GEE9_SOLLC; Uncharacterized protein
TrEMBLM1B5V80.0M1B5V8_SOLTU; Uncharacterized protein
STRINGSolyc05g009220.2.10.0(Solanum lycopersicum)
STRINGPGSC0003DMT4000377680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213