PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00022g00013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 203aa    MW: 23485 Da    PI: 4.4728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00022g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-091444131
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                              rg+WT eEd ll++++  +G g+W++ a++ 
  Peinf101Scf00022g00013.1 14 RGPWTLEEDNLLIHYISSHGEGRWNALAKCA 44
                              89**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.119958IPR017930Myb domain
SuperFamilySSF466892.51E-81051IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-111245IPR009057Homeodomain-like
PfamPF002497.5E-81443IPR001005SANT/Myb domain
CDDcd001675.15E-61651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNSCSHEDEF ELRRGPWTLE EDNLLIHYIS SHGEGRWNAL AKCAAIKSLW MPRLLEKMEQ  60
QCSSSISSPA SSSTKISIEK QSPPLPSPLI NHQEPYKSHD NTCNYDNEKT NSLEHPRNYL  120
SNSKSMLKLP HEMTEDPTLY NNLVQEEGYH VESFNQQPDF SSQEMSISEC EMGETNWFTD  180
EMGGSLWNMD EFWQFRKLGD VDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754444e-35HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626235.18e-54PREDICTED: transcription factor MYB108-like
TrEMBLA0A1S3ZW052e-52A0A1S3ZW05_TOBAC; transcription factor MYB108-like
STRINGXP_009626235.13e-53(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.16e-15myb domain protein 78