PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00022g02026.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 583aa    MW: 62857.7 Da    PI: 6.8752
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00022g02026.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31231288260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  Peinf101Scf00022g02026.1 231 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 288
                               8****************************************.***************85 PP
2WRKY106.31.6e-33406464159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+a+dpk+v++tYeg+Hnh+
  Peinf101Scf00022g02026.1 406 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERAAHDPKAVITTYEGKHNHD 464
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-26221289IPR003657WRKY domain
PROSITE profilePS5081122.527225289IPR003657WRKY domain
SuperFamilySSF1182902.09E-24227289IPR003657WRKY domain
SMARTSM007749.2E-33230288IPR003657WRKY domain
PfamPF031069.0E-24231287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37391466IPR003657WRKY domain
SuperFamilySSF1182902.22E-29398466IPR003657WRKY domain
PROSITE profilePS5081138.572401466IPR003657WRKY domain
SMARTSM007743.3E-39406465IPR003657WRKY domain
PfamPF031063.8E-26407464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MEDSQLRNGT SAATDGGFSS VSGGSNGGAK YKLMTPAKLP ISRSTCITIP PGLSPSSFLE  60
SPVLLSNIKA EPSPTTGSFS KLQPVQGSGR NAAFLLTRGS CSGNSYGERN SSGFEFKLAG  120
GSSSASGSFA TEHVTSTGLD IQQNEPLKEV QDQSYPQLLT PSSLTNHETA TSKEQSIAVP  180
INVDASSEEE SLSIPINADA VNLRGQSNSS MQESHVDHKD VSSVTAERST DDGYNWRKYG  240
QKLVKGSEFP RSYYKCTYPN CEVKKIFERS PEGQITEIVY KGSHDHPKPQ LSRRFTPGAL  300
MSIQEDKCEK EACFRGQGVF VEDKFNTNAQ SSKIEPSSTP VSPQEGDTDG LEGAVSQMQG  360
SNNDMDEDDP FVKRRKMDGG MDITPVIKPI REPRVVVQTV SEVDILDDGY RWRKYGQKVV  420
RGNPNPRSYY KCTNAGCPVR KHVERAAHDP KAVITTYEGK HNHDVPTARN NSHEMAGSMP  480
ATGISRIRAG KTDSLSLDLG VGNGYGVENG NNGQFQTVHG QVQISHSGMM VPAAVAARYG  540
VVNSGMSRFG AIDNHVQGPG FETLPLQPST QCRQNYGSIL LGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37231466877Probable WRKY transcription factor 4
2lex_A2e-37231466877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082104.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-147WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0N7KBZ00.0A0A0N7KBZ0_SOLTU; Transcription factor
TrEMBLM1C0Z40.0M1C0Z4_SOLTU; Uncharacterized protein
STRINGSolyc07g065260.2.10.0(Solanum lycopersicum)
STRINGPGSC0003DMT4000574090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-146WRKY family protein