PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00032g09002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 222aa    MW: 23105.1 Da    PI: 9.6382
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00032g09002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.2e-102651227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              kt+lC+ +     Ck+Gd+C+FaHg+
  Peinf101Scf00032g09002.1 26 KTKLCNKYNTAEGCKFGDKCNFAHGE 51
                              8***********************96 PP
2zf-CCCH34.63.2e-11189213126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+lC +f + G C +GdrC+FaHg
  Peinf101Scf00032g09002.1 189 KKTKLCENFTK-GSCTFGDRCHFAHG 213
                               59*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-132254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-82354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9292452IPR000571Zinc finger, CCCH-type
SMARTSM003560.00142451IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-72651IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.65E-1590166IPR004088K Homology domain, type 1
SMARTSM003225.5E-1294164IPR004087K Homology domain
PROSITE profilePS5008414.3295159IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.9E-1595165IPR004088K Homology domain, type 1
PfamPF000132.4E-1097161IPR004088K Homology domain, type 1
CDDcd001054.59E-1397159No hitNo description
SuperFamilySSF902299.29E-9186218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-15187219IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-7188214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314188215IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9189213IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MNSAHAPSFR NAGAPSFSNG NAPAVKTKLC NKYNTAEGCK FGDKCNFAHG EWEIGKPIVP  60
SQEDPRAMGA GPMPGRYGGR METAVSGPAA SFGTSATAKI SVDASLAGPI IGKGGVNSKQ  120
IIRQTGAKLA IRDHETDPNL RNIELEGTFE QISQASAMVR ELINNLGPVG GPGRTHAIPG  180
GAAPQVSNKK TKLCENFTKG SCTFGDRCHF AHGAGELRKT GV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767111.11e-137PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016439759.11e-137PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-78C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3XIT11e-136A0A1S3XIT1_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A1U7VQ881e-136A0A1U7VQ88_NICSY; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009767111.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-63C3H family protein