PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00035g38010.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 345aa MW: 38067.5 Da PI: 7.1245

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00035g38010.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.9	6.4e-17	57	117	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ kl ++ +++V++WFqNr+ + k+ Peinf101Scf00035g38010.1 57 KQRWNPRPEQIHILEAIFNSgMVNPPRDEIRKIRIKLqefgQVGDANVFYWFQNRKSRSKH 117 89***************99***********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.042	53	118	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.59E-11	54	122	IPR009057	Homeodomain-like
SMART	SM00389	3.7E-8	55	122	IPR001356	Homeobox domain
CDD	cd00086	7.14E-8	56	119	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.2E-7	56	124	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-14	57	117	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008284	Biological Process	positive regulation of cell proliferation
GO:0030010	Biological Process	establishment of cell polarity
GO:0048825	Biological Process	cotyledon development
GO:0090451	Biological Process	cotyledon boundary formation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MASSNRHWPS LFKSKSCTSH HQWHHDINSS LMSAGGCNKA PCTSVPAICE ERSPEPKQRW 60 NPRPEQIHIL EAIFNSGMVN PPRDEIRKIR IKLQEFGQVG DANVFYWFQN RKSRSKHKQQ 120 RHLQTNNKTP SSSSSSNSVG STNNNNKNVI DLLNSPTASV NQFQQTYFGT NNDFNMAAEP 180 FIFTQGFLHD VATDPHSCDV VHNSSGLFLS ELMGISQTAP LKKAENEKMD YIVPSAPNTT 240 NHSTVVPLTT SSTTPNISHI QGVEGSAGGC PTKAMIFIND VAFEVPAGPF NVSEVFGDDA 300 LLIHSSGQPL LTNEWGVTIQ PLQHGAFYYL VHTSTPVHDN TIALM

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MASSNRHWPS LFKSKSCTSH HQWHHDINSS LMSAGGCNKA PCTSVPAICE ERSPEPKQRW  60
NPRPEQIHIL EAIFNSGMVN PPRDEIRKIR IKLQEFGQVG DANVFYWFQN RKSRSKHKQQ  120
RHLQTNNKTP SSSSSSNSVG STNNNNKNVI DLLNSPTASV NQFQQTYFGT NNDFNMAAEP  180
FIFTQGFLHD VATDPHSCDV VHNSSGLFLS ELMGISQTAP LKKAENEKMD YIVPSAPNTT  240
NHSTVVPLTT SSTTPNISHI QGVEGSAGGC PTKAMIFIND VAFEVPAGPF NVSEVFGDDA  300
LLIHSSGQPL LTNEWGVTIQ PLQHGAFYYL VHTSTPVHDN TIALM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF187281	0.0	EF187281.1 Petunia x hybrida strain W138 EVERGREEN mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622251.1	1e-129	PREDICTED: WUSCHEL-related homeobox 9 isoform X1
Refseq	XP_009793302.1	1e-129	PREDICTED: WUSCHEL-related homeobox 9-like isoform X2
Refseq	XP_016462054.1	1e-129	PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
Refseq	XP_016489291.1	1e-129	PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBL	A9XDF7	0.0	A9XDF7_PETHY; EVERGREEN
STRING	XP_009622251.1	1e-129	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	3e-67	WUSCHEL related homeobox 8