PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00040g01007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 306aa MW: 34701.5 Da PI: 8.9652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00040g01007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.5	8.4e-07	246	290	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + n Er+RR ++++ L+ ++P + +++ ++iL +Av+Y+ksL Peinf101Scf00040g01007.1 246 TSNCSERKRR-KLKKMVKALKGIVPGS-----SRMNTVTILDEAVRYLKSL 290 5689999998.7***********97.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.287	241	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-10	245	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.01E-9	245	295	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-9	245	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-4	246	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-9	248	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MHIAITLKRY RAVKEAGEIK MHVGSVAYYQ LMLVCQAEYF RQLLKPVTLD ILNIPIGKYI 60 SLLLMHSNYQ ISYQKPPFSP EYQAGGNNLF DIPTPSVVGT MALPNGFRPS VPIHGFEFQS 120 SEACPKNFII FDQTDRRSQI MFHPATASKF PYPDLNFNAT CFPDGMKRKV ANDENTEVSS 180 YLKEDSDDIN ALLSSEEAKY EEYDDEEVST ARTDANYGNS SPESYSNYYC QSKKSRTYFR 240 KSSGSTSNCS ERKRRKLKKM VKALKGIVPG SSRMNTVTIL DEAVRYLKSL KVEVQKLGVE 300 NLKTFA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019226808.1	1e-142	PREDICTED: transcription factor bHLH144
Swissprot	Q9ASX9	9e-33	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A2G2XEA8	1e-155	A0A2G2XEA8_CAPBA; Uncharacterized protein
STRING	XP_009801820.1	1e-140	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8124	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	2e-32	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]