PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00041g04011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28301.2 Da    PI: 8.9769
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00041g04011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-30959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye+ss
  Peinf101Scf00041g04011.1  9 KKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFSS 59
                              68***********************************************96 PP
2K-box84.62e-2883175799
                     K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                               +s++++++e+ ++e+ kLk+++e+Lqr qR+llG++L++L++ eL++Le qL++slk i+s++++l+l+q+++lq kek   e+n
  Peinf101Scf00041g04011.1  83 RSVKDNNEERIYREYLKLKAKYESLQRYQRQLLGDELGPLNIDELEHLELQLDSSLKLIKSTRTQLMLDQLSDLQTKEKLWVEAN 167
                               44999******************************************************************************** PP

                     K-box  92 kaLrkkle 99 
                               k L++kle
  Peinf101Scf00041g04011.1 168 KVLERKLE 175
                               ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.011161IPR002100Transcription factor, MADS-box
CDDcd002653.77E-43278No hitNo description
SuperFamilySSF554551.44E-33291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014868.3E-2486174IPR002487Transcription factor, K-box
PROSITE profilePS5129714.62890180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVELKK IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFSN RGKLYEFSST  60
SNMVKTLDRY QKCSYGTLEV NHRSVKDNNE ERIYREYLKL KAKYESLQRY QRQLLGDELG  120
PLNIDELEHL ELQLDSSLKL IKSTRTQLML DQLSDLQTKE KLWVEANKVL ERKLEQIYAE  180
NNIQQSWGGG QQSGAYSQQH AQTQGFFQPL ECNSTLQIGY DPTTSSQITA VTSGQNVNGI  240
IPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-259617423101Developmental protein SEPALLATA 3
4ox0_B2e-259617423101Developmental protein SEPALLATA 3
4ox0_C2e-259617423101Developmental protein SEPALLATA 3
4ox0_D2e-259617423101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352350.0AF335235.1 Petunia x hybrida MADS-box transcription factor FBP5 (FBP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589584.11e-162PREDICTED: developmental protein SEPALLATA 1-like isoform X1
RefseqXP_016476136.11e-162PREDICTED: developmental protein SEPALLATA 1-like isoform X1
SwissprotQ8LLR21e-124MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLQ9ATF21e-178Q9ATF2_PETHY; MADS-box transcription factor FBP5
STRINGXP_009589584.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-102MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]