PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00042g05014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 227aa MW: 26043.1 Da PI: 4.9104

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00042g05014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.5e-21	76	136	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Peinf101Scf00042g05014.1 76 RQRWTPTPVQLQILERMFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 136 89***************99************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.7E-13	74	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-18	75	140	IPR009057	Homeodomain-like
CDD	cd00086	8.58E-13	76	138	No hit	No description
Pfam	PF00046	5.4E-19	76	136	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-16	76	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.301	76	137	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEWDEQLQQQ QPPQTVEDMN GTGGGGMFVK VMTDEQMEVL RKQIAVYAVI CEKLVDLHKS 60 VASQHDLAAG HRICGRQRWT PTPVQLQILE RMFDQGNGTP SKQKIKDITF ELSQHGQISE 120 TNVYNWFQNR RARSKRKQQV MGNNVVESEV ETEVESPNEK KTKPEDLQYS DILTSKAEEG 180 SSRPAENFDQ LSFYAMSNPR MDQLIEKMED AASYHPYLHA ENFDMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253116.1	1e-130	PREDICTED: WUSCHEL-related homeobox 13-like isoform X1
Swissprot	Q5QMM3	7e-69	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1J6IHE1	1e-129	A0A1J6IHE1_NICAT; Wuschel-related homeobox 13
STRING	XP_009597868.1	1e-120	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-63	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]