PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00049g02031.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 296aa MW: 32626.5 Da PI: 8.3711

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00049g02031.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.8e-13	224	269	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk+Lq Peinf101Scf00049g02031.1 224 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 269 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.275	218	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-16	221	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.74E-13	222	271	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.5E-15	223	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-10	224	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	224	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MVNSNSQLPP QYPRQNCTTT AHVGSMDGGY RVMGSNLMRQ NSSPAGLFSH LNAQNGYGTL 60 KGGVGGYRMA NGANGDSISP SSSRSKGHFS FPSGTPSSLG MLSRISEVDN ESSIATVPDE 120 EKCGDGNSEA EFYNPGFPFT SWSDSSQFQD TITGHRREID NEGNKLFANA QIEELGNRPP 180 ILSHHLSLPK TPAELAVMEK LLHFQDTIPC KIRAKRGCAT HPRSIAERVR RTRISERMRK 240 LQDLVPNMDK QTNTADMLDL AVDYIKDLQE QYKTLTDIRA NCKCSAMQNP VSNRRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244298	2e-81	AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence.
GenBank	AC244588	2e-81	AC244588.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence.
GenBank	HG975449	2e-81	HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBank	HG975522	2e-81	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351215.2	1e-170	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	5e-81	BH130_ARATH; Transcription factor bHLH130
TrEMBL	M1AEJ4	1e-169	M1AEJ4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400021062	1e-170	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-79	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]