PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00049g09027.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 256aa    MW: 27480.5 Da    PI: 8.5004
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00049g09027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.2e-1191116227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               k e Cr++  +G C++G++C+F Hg+
  Peinf101Scf00049g09027.1  91 KSEVCRRWEDSGSCRFGSKCRFVHGK 116
                               7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.68589117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-1191121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-791120IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-891116IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
SVSPLVRYFH SSSSDSPKHR SSSGSRGSSG SGGGFRVPLG SIENIESPFR TPVKVEEEVV  60
VMDGILVGPK FGGKNKPSPL SSTSDYSGEN KSEVCRRWED SGSCRFGSKC RFVHGKEDIR  120
STAFANRNQS EVQISSRSHS SGSCSYGPRG RFVHQQVQSG ANPIVAAAAM ATPTTRIVSV  180
KDREPPSSGS STTSTSIVAI SCFSDWCPLD DNIEVFLPGS AEKCTSREDV DAHIQSVLHG  240
HTGRKRLPVF IDLVKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242910.19e-80PREDICTED: zinc finger protein 36, C3H1 type-like 3
RefseqXP_019242911.19e-80PREDICTED: zinc finger protein 36, C3H1 type-like 3
RefseqXP_019242912.19e-80PREDICTED: zinc finger protein 36, C3H1 type-like 3
RefseqXP_019242913.19e-80PREDICTED: zinc finger protein 36, C3H1 type-like 3
RefseqXP_019242919.19e-80PREDICTED: zinc finger protein 36, C3H1 type-like 3
RefseqXP_019242926.19e-80PREDICTED: zinc finger protein 36, C3H1 type-like 3
RefseqXP_019242932.19e-80PREDICTED: zinc finger protein 36, C3H1 type-like 3
TrEMBLA0A1J6J4N22e-78A0A1J6J4N2_NICAT; Uncharacterized protein
STRINGXP_009589110.12e-77(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-06C3H family protein