PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00052g03007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23313.7 Da    PI: 6.0478
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00052g03007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.2e-261059251
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               i++k  rqvtfskRr+g++KKA+ELS+LCda+vav++fs++g+ly++ss
  Peinf101Scf00052g03007.1 10 LIQDKNSRQVTFSKRRKGLIKKAKELSILCDADVAVVVFSNRGRLYDFSS 59
                              699*********************************************96 PP
2K-box51.15.9e-18811681198
                     K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                               +a+a+  + ++a +    e+Lq+ qR+l   d+++L++ +L +Le+q++++l + Rs+K++l++e+++ l +ke+ l+een+ L+
  Peinf101Scf00052g03007.1  81 SAEASDAESKYASIMTIGEMLQTIQRQLEEPDVDDLNVTDLVHLENQIQTALMEARSRKTHLMMESLKSLHEKENLLREENRILE 165
                               55667778899999999******************************************************************** PP

                     K-box  96 kkl 98 
                                k+
  Peinf101Scf00052g03007.1 166 DKI 168
                               998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.59161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-35160IPR002100Transcription factor, MADS-box
CDDcd002651.00E-33273No hitNo description
SuperFamilySSF554558.24E-30278IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.01884174IPR002487Transcription factor, K-box
PfamPF014866.8E-1487168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010221Biological Processnegative regulation of vernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRKKAEIKL IQDKNSRQVT FSKRRKGLIK KAKELSILCD ADVAVVVFSN RGRLYDFSSN  60
NSLTEIVQRY HSHVEAEKEI SAEASDAESK YASIMTIGEM LQTIQRQLEE PDVDDLNVTD  120
LVHLENQIQT ALMEARSRKT HLMMESLKSL HEKENLLREE NRILEDKISM TTNTREVNGM  180
DLDFTNLAPI QPIVPMVPLN LMVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-16175174Myocyte-specific enhancer factor 2B
1tqe_Q1e-16175174Myocyte-specific enhancer factor 2B
1tqe_R1e-16175174Myocyte-specific enhancer factor 2B
1tqe_S1e-16175174Myocyte-specific enhancer factor 2B
6c9l_A1e-16175174Myocyte-specific enhancer factor 2B
6c9l_B1e-16175174Myocyte-specific enhancer factor 2B
6c9l_C1e-16175174Myocyte-specific enhancer factor 2B
6c9l_D1e-16175174Myocyte-specific enhancer factor 2B
6c9l_E1e-16175174Myocyte-specific enhancer factor 2B
6c9l_F1e-16175174Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3705290.0AY370529.1 Petunia x hybrida MADS-box protein 15 (PMADS15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237677.11e-106PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
TrEMBLQ6UGQ61e-134Q6UGQ6_PETHY; MADS-box protein 15
STRINGXP_009625850.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.12e-42AGAMOUS-like 31