PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00053g05013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 198aa    MW: 22062.5 Da    PI: 4.5454
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00053g05013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-1323109196
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               ffkv +++++++++   +p +f+ e+g   + +  + le +sg  W+vkl  +++ g+ +l++GW++F +   +  g f++F+++
  Peinf101Scf00053g05013.1  23 FFKVVLSPHASTLH---IPDEFTMEYGP--NLGDLVLLEVPSGAIWKVKL--ENSNGTAWLKEGWNQFKEYYSIGCGYFLLFQYN 100
                               78888777777766...*********84..4788999999**********..********************************* PP

                               SSSEE..EEEE CS
                        B3  86 grsefelvvkv 96 
                               g+s f   v +
  Peinf101Scf00053g05013.1 101 GNSHF--SVFI 109
                               99999..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2216113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.01220113IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-2221120IPR015300DNA-binding pseudobarrel domain
CDDcd100178.16E-1722111No hitNo description
SMARTSM010197.6E-1223113IPR003340B3 DNA binding domain
PfamPF023621.4E-1023109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVKRCWQGEP EPVNSSERVP SHFFKVVLSP HASTLHIPDE FTMEYGPNLG DLVLLEVPSG  60
AIWKVKLENS NGTAWLKEGW NQFKEYYSIG CGYFLLFQYN GNSHFSVFIF DLSASEIEYP  120
SGPNEDMTPE NVVNTVGDAS HRKDVGGPET ENNSCDDTVD DLSRNKTAGD NEMKARRVTL  180
GDGGHSGEGE LLRTRLIM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480126.18e-86PREDICTED: B3 domain-containing protein At4g34400-like isoform X1
TrEMBLA0A1S4AU632e-84A0A1S4AU63_TOBAC; B3 domain-containing protein At4g34400-like isoform X1
STRINGXP_009797235.12e-80(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-23B3 family protein