PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00055g20009.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 336aa MW: 37417 Da PI: 7.8752

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00055g20009.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.8	3.6e-52	13	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhP+deel+++yL kk++g++ + + + evd++k+ePw++p+ + + kewyf+s+rd+kyatg r+nrat sgyWka Peinf101Scf00055g20009.1 13 LPPGFRFHPRDEELICDYLMKKIAGSESNQHPLLIEVDLNKCEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATLSGYWKA 97 79***********************999788***********7666789************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkd++v++ kg+lvg++ktLvfy+grapkg+k+dWvmhe+rle Peinf101Scf00055g20009.1 98 TGKDRAVIR-KGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLE 140 ****9.999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-60	4	166	IPR003441	NAC domain
PROSITE profile	PS51005	57.424	13	165	IPR003441	NAC domain
Pfam	PF02365	2.6E-26	14	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSSSSLSTVE SKLPPGFRFH PRDEELICDY LMKKIAGSES NQHPLLIEVD LNKCEPWEIP 60 EVACVGGKEW YFYSQRDRKY ATGLRTNRAT LSGYWKATGK DRAVIRKGSL VGMRKTLVFY 120 QGRAPKGRKS DWVMHEFRLE GPALTTRPQI SSVKEDWVLC RVFHKNRELL AVAAKQGTDN 180 SNIYHNDDTL SSSSLPQLMD PYITFDQTQP NNINMNELYY EQVPCFSIFN PNNNQNFSHS 240 HHLPTTATPI TTAYGGLPAE IGTYLNAAAT SSSCDNKVIK AVLSHLSTKM EGNSSNAGHI 300 NNVVNVKGGG SPSFGEGSSE TSFLSEVGLT TMWNNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-52	13	166	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-52	13	166	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-52	13	166	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-52	13	166	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	13	166	20	169	NAC domain-containing protein 19
3swm_B	1e-51	13	166	20	169	NAC domain-containing protein 19
3swm_C	1e-51	13	166	20	169	NAC domain-containing protein 19
3swm_D	1e-51	13	166	20	169	NAC domain-containing protein 19
3swp_A	1e-51	13	166	20	169	NAC domain-containing protein 19
3swp_B	1e-51	13	166	20	169	NAC domain-containing protein 19
3swp_C	1e-51	13	166	20	169	NAC domain-containing protein 19
3swp_D	1e-51	13	166	20	169	NAC domain-containing protein 19
4dul_A	9e-52	13	166	17	166	NAC domain-containing protein 19
4dul_B	9e-52	13	166	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605814.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like isoform X2
Refseq	XP_016460549.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like isoform X2
Swissprot	Q84TE6	1e-110	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A1S3Z869	0.0	A0A1S3Z869_TOBAC; NAC domain-containing protein 21/22-like isoform X2
STRING	XP_009605813.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-105	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]