PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00058g02002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 450aa    MW: 50647.9 Da    PI: 6.0687
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00058g02002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.45.5e-3099188166
                       TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 
                               a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l +                     
  Peinf101Scf00058g02002.1  99 ATGRKDRHSKVSTATGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALENPfevfskkidstnkalnrrsi 183
                               589***********************************************************99988777644433333333333 PP

                       TCP  66 ....s 66 
                                   +
  Peinf101Scf00058g02002.1 184 sgyrN 188
                               33330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-29100212IPR005333Transcription factor, TCP
PROSITE profilePS5136929.131102160IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MNHHLQVSDE EESEDEKEEE VFQENAQAIY QNHNQMQHLQ QAEWANFTSP SATLVSKHQK  60
KTQLCPSYKE EIKKVALKKK PKRAKPDVIE VHGGRIVRAT GRKDRHSKVS TATGPKDRRV  120
RLSPNTAIQF YDVQDRLGYD RPSKAIDWLI KEAKAAIDAL ENPFEVFSKK IDSTNKALNR  180
RSISGYRNAE GEVGQFALEQ RCPADKKMDL EELHCHSSEL NGTMRYSADQ FPGEGYIERS  240
RKVSQEDGDI PKYECGLEQQ QQLNDSRIGN LSLYSSANDV KNQSLSEFQT YTQGHFNSES  300
KSQAQGNFLN FQSSQDESIV FSGDHQGFLT TSVPLNSNSN LGMTRLKEGT NWNAQVGEDS  360
TFSFISHHFP SVLGQNQLFC QREPLQSSYF PQTSVPLSTQ FQTISFANIG LARDDLFGLS  420
TSPIMEVSDE GQGTISNPSA NATSLLQYQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-18107160154Putative transcription factor PCF6
5zkt_B2e-18107160154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443396.11e-144PREDICTED: transcription factor TCP3-like
TrEMBLA0A4D6FCF80.0A0A4D6FCF8_PETHY; TCP11
STRINGXP_009771449.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.19e-36TCP domain protein 10