PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00058g12011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 247aa    MW: 28033.5 Da    PI: 8.9995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00058g12011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.32.1e-3491491128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                               lp+G++F+P+d+e++ e+L++kv +++   +        +i+++d    i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk
  Peinf101Scf00058g12011.1   9 LPAGVKFDPSDQEIL-EHLNAKVLSDThklH---PlideFIPTIDgengICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGNRK 88 
                               799***********9.99****999995551...233333444434445**********.566677888**************** PP

                       NAM  75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               +r+++      + +W++tgk+++v+  +g+l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Peinf101Scf00058g12011.1  89 RRKVHtdtdggETRWHKTGKTRPVFI-SGNLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 149
                               **743345555677************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-385168IPR003441NAC domain
PROSITE profilePS5100533.9829168IPR003441NAC domain
PfamPF023655.1E-1510149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
RGIHDLPGLP AGVKFDPSDQ EILEHLNAKV LSDTHKLHPL IDEFIPTIDG ENGICYTHPE  60
KLPGVSKDGQ VRHFFHRPSK AYTTGNRKRR KVHTDTDGGE TRWHKTGKTR PVFISGNLKG  120
YKKILVLYTN YGRQRKPEKT NWVMHQYHLG DNEEEKDGEL VVSKVFYQTQ PRQCSIKEPF  180
NMSTSLSRQD HSPITKTPNF IDYYNPPFVS YHVGSQNCDS SSQLIPSLVV HADGSSILNV  240
PSNTSKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489220.11e-150PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-108NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1S4BK281e-149A0A1S4BK28_TOBAC; NAC domain-containing protein 73-like
STRINGXP_009797428.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-111NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]