PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00065g01007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 646aa    MW: 74886.2 Da    PI: 7.3903
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00065g01007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.13.3e-1963155290
                      FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                               +Y ++Ak+vGFsvr ++   + ++   i+kr++vC + g+++++k  +++++r r+++r++C+ak+ + ke      +w v  ++
  Peinf101Scf00065g01007.1  63 CYVSFAKKVGFSVRHDRYLGNeEHPMGIYKRDYVCHRAGSPRSQKVVEKERQRDRKSSRCNCNAKMSIAKELidgIPRWIVVYFD 147
                               7*************9998776355667*****************999999999****************998845569******* PP

                      FAR1  83 leHnHela 90 
                               + HnHel 
  Peinf101Scf00065g01007.1 148 NVHNHELL 155
                               ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1663155IPR004330FAR1 DNA binding domain
PfamPF105511.6E-12260314IPR018289MULE transposase domain
SMARTSM005750.0061481508IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MDSIVGLSRS RCPCGYNGCY INGDVIVGST EIFNEELAQE NATGNEDLHK GRVFSTHEEA  60
YNCYVSFAKK VGFSVRHDRY LGNEEHPMGI YKRDYVCHRA GSPRSQKVVE KERQRDRKSS  120
RCNCNAKMSI AKELIDGIPR WIVVYFDNVH NHELLNEKEV RFLPAYRNID IIDQKWITLL  180
PKAGCSMSLI RRVLELEKGI DVGSTNIEYD ALELLKVCKS LKDKDVDFQY DFTVDACQRL  240
EHIIWAFGDS THAYEIFGDV AVFDTTYRLN RYEMPLGVWI GVNNHGNSVF FGCVLLRNEK  300
ASSFSWALKI YELGSIEEFE QQWDELIAKF DLESDRHIKL LYANRASWAL PYLKGYFFAG  360
MTTTSRSESI NAYLKKFLHA RTSLKEFVEQ VGAAVSIRNY AAEEAIMRQK YYNPQIKTFM  420
PMEKNASKVL TPFAFKLLQN EMILSVEYGL FSNGGDSYIV RHYRKVDGGR LVYWNPLEEI  480
VQCSFQEFEF LGILCRHCIR VLSSHNYFML PDKYFLPRWR QENSLVLKFT HTTNPPNDAN  540
EFQSLQSIIR DLSLESMKSK GRLDCAKKEL ERVLQVVQCL PENEHIYEEH RQFIISQKTE  600
HDSSDDDYHV ENPQQSQTKG RKRGKRLFGG VEAAKKPRYC HVPNCG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1619626GRKRGKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596355.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1S4CD640.0A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_009596355.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-125FAR1-related sequence 10