PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00073g00009.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 120aa MW: 13770.7 Da PI: 7.8787

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00073g00009.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.1e-10	50	93	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++ E +++ +a + + ++ +W Ia+++g g++ +++k ++ Peinf101Scf00073g00009.1 50 AWSPKENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSIEEVKQHY 93 7******************************.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.29	46	101	IPR017884	SANT domain
SMART	SM00717	3.1E-8	47	99	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.25E-13	50	104	IPR009057	Homeodomain-like
Pfam	PF00249	4.1E-9	50	93	IPR001005	SANT/Myb domain
CDD	cd00167	6.84E-9	50	93	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-5	50	94	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MTTGMSFEND RFPLLHHIVL LVVSKEDGSS LILLFHLFQN QTMASNSLSA WSPKENKKFE 60 QALAVYDKDT PDRWQNIAKY VGGKSIEEVK QHYAILIEDL KHIESGDVPF PKYRSGGKYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-31	43	117	1	77	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009603278.1	2e-47	PREDICTED: protein RADIALIS-like 1
Refseq	XP_016451407.1	2e-47	PREDICTED: protein RADIALIS-like 1
Refseq	XP_016451408.1	2e-47	PREDICTED: protein RADIALIS-like 1
Refseq	XP_018627017.1	2e-47	PREDICTED: protein RADIALIS-like 1
Refseq	XP_019242704.1	2e-47	PREDICTED: protein RADIALIS-like 1
Swissprot	Q58FS3	3e-31	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A1J6J417	4e-46	A0A1J6J417_NICAT; Protein radialis-like 1
TrEMBL	A0A1S3YH96	4e-46	A0A1S3YH96_TOBAC; protein RADIALIS-like 1
STRING	XP_009603278.1	6e-47	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA202	24	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	9e-33	RAD-like 6

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]