PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00077g06016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 92aa    MW: 10464.7 Da    PI: 9.3627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00077g06016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-0819591454
                              HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              d+i +  ++L++l+P+ + + +s K+s + +L+++++YI++L
  Peinf101Scf00077g06016.1 19 DQIADLVSKLQQLIPEiR-NRRSDKVSASKVLQETCNYIRNL 59
                              6899999*********77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.328559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-91977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-91976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-51959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRSRQ SGGSRISDDQ IADLVSKLQQ LIPEIRNRRS DKVSASKVLQ ETCNYIRNLH  60
REVDDLSDRL SQLLESTESD SAQAAIIRSL FM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1398409e-56AC139840.1 Solanum demissum chromosome 5 clone PGEC323D8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022736077.15e-47transcription factor PRE3-like
SwissprotQ9LJX12e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A175YP888e-45A0A175YP88_DAUCS; Uncharacterized protein
TrEMBLA0A2G9GFK77e-45A0A2G9GFK7_9LAMI; Uncharacterized protein
TrEMBLM5XQD99e-45M5XQD9_PRUPE; Uncharacterized protein
STRINGEMJ281142e-45(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-40bHLH family protein