PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00077g08009.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

TCP

Protein Properties

Length: 354aa MW: 38805.7 Da PI: 7.9305

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00077g08009.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.6	1.1e-38	51	132	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ + + s +s+ s Peinf101Scf00077g08009.1 51 QPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYSsLNISLRSA-S 132 689**************************************************************9999666322222222.1 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.1E-36	55	162	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.583	57	111	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
METPHDNRNP MQRPNFPLQL LEKREDPISS SSIYPYASDQ KSNQEPNKKP QPKRTSTKDR 60 HTKVDGRGRR IRMPATCAAR VFQLTKELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN 120 YSSLNISLRS ASYSRHNYNL TQNLGHDTSR GRNCFNGVGL LSSENTSMGL NIFPSGNNFN 180 VNNAMLQAKH ELSDQISIDA DIGRKRRSEE DLAPTLQNNY HMGNYNYMLQ SSNSGSIQAS 240 HDQGQIHPAT TLHMMTNNSS SHHHYDPNNS LSTFPSIGNL NVRGGSLSNG GLLNFMNFHP 300 SLLGQHSSGG GGGGGMAVEG QLGMLTAMNS FRRIGRDSGD GADDHEDGYH HHPS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

METPHDNRNP MQRPNFPLQL LEKREDPISS SSIYPYASDQ KSNQEPNKKP QPKRTSTKDR  60
HTKVDGRGRR IRMPATCAAR VFQLTKELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN  120
YSSLNISLRS ASYSRHNYNL TQNLGHDTSR GRNCFNGVGL LSSENTSMGL NIFPSGNNFN  180
VNNAMLQAKH ELSDQISIDA DIGRKRRSEE DLAPTLQNNY HMGNYNYMLQ SSNSGSIQAS  240
HDQGQIHPAT TLHMMTNNSS SHHHYDPNNS LSTFPSIGNL NVRGGSLSNG GLLNFMNFHP  300
SLLGQHSSGG GGGGGMAVEG QLGMLTAMNS FRRIGRDSGD GADDHEDGYH HHPS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF514213	6e-91	EF514213.1 Solanum tuberosum strain P6/210 contig r1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604199.1	1e-161	PREDICTED: transcription factor TCP15-like
Refseq	XP_016474072.1	1e-161	PREDICTED: transcription factor TCP15-like
TrEMBL	A0A1S4ABN5	1e-159	A0A1S4ABN5_TOBAC; transcription factor TCP15-like
STRING	XP_009604199.1	1e-160	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13947	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-51	TCP family protein