PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00078g00002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 139aa    MW: 16324 Da    PI: 6.253
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00078g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS842.5e-261135239374
                      GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                               +vv+  ea++n++ F++r  eal  ++alfd+le+  +++++ r++ E  + ++ i n+++ceg+er+ r+ +l  Wr+ +e++G
  Peinf101Scf00078g00002.1   1 MVVIGIEANTNAPIFMDR-YEALFLFTALFDCLETCKGQDNRYRMTFEGLIWRKIIYNMITCEGEERTFRNARLVVWRALFENFG 84 
                               789999************.59**************************************************************** PP

                      GRAS 324 Fkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvSaWr 374
                                k+ +lse    qa+l+  + + +g  +++ + + l++ Wk+ p+++vS+W+
  Peinf101Scf00078g00002.1  85 IKEQELSEASLYQANLMAVRSA-HGfCTLDMDGKGLMIKWKETPIMFVSSWK 135
                               ***************9999888.55268899999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.7E-241135IPR005202Transcription factor GRAS
PROSITE profilePS5098511.9481115IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MVVIGIEANT NAPIFMDRYE ALFLFTALFD CLETCKGQDN RYRMTFEGLI WRKIIYNMIT  60
CEGEERTFRN ARLVVWRALF ENFGIKEQEL SEASLYQANL MAVRSAHGFC TLDMDGKGLM  120
IKWKETPIMF VSSWKFHHD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253877.11e-68PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1J6I2103e-67A0A1J6I210_NICAT; Della protein rgl1
STRINGPGSC0003DMT4000562292e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1835944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-17RGA-like 1