PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00082g09001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ZF-HD

Protein Properties

Length: 162aa MW: 18434.6 Da PI: 8.828

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00082g09001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	86.7	2.4e-27	9	60	5	59
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 YkeCl+NhAa+lG +a DGCgEf+ + ++ + +l+CaACgCHRnFHR+ +++ Peinf101Scf00082g09001.1 9 LYKECLRNHAANLGNYANDGCGEFTLD---DTLPGTLQCAACGCHRNFHRKVTNY 60 7***********************8...66799**************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.1E-23	9	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-15	10	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.69	10	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.9E-22	10	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.57E-14	78	146	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-25	79	148	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.7E-25	88	146	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MEGDNTNDLY KECLRNHAAN LGNYANDGCG EFTLDDTLPG TLQCAACGCH RNFHRKVTNY 60 NRDPEMTTDT IDGSTGRLSL ESQERSGKKR FRTKFKTDQK EKMLEFAEKL GWKLQRTDQE 120 DEIKIFCKRA GVSRKVFKVW MHNHKNSSST SVSTGNASSL TR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-19	89	151	18	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000742.1	2e-77	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	A2XLF4	1e-37	ZHD11_ORYSI; Zinc-finger homeodomain protein 11
Swissprot	Q10DV5	1e-37	ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
Swissprot	Q9SB61	8e-38	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2K1Y8K4	2e-75	A0A2K1Y8K4_POPTR; Uncharacterized protein
STRING	POPTR_0012s03770.1	3e-76	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11865	20	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-38	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]