PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00099g01007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 448aa MW: 49232.6 Da PI: 7.9792

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00099g01007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	46	90	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Peinf101Scf00099g01007.1 46 RERWSEEEHKKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 90 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.56E-16	40	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.086	41	95	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.7E-15	44	93	IPR006447	Myb domain, plants
SMART	SM00717	5.5E-13	45	93	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-14	46	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-9	46	86	IPR009057	Homeodomain-like
CDD	cd00167	2.80E-10	48	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MLPSRDMISP DVGAPSPRSI QLEEQVSPAD EYAPKIRKAY TITKQRERWS EEEHKKFLEA 60 LKLHGRAWRR IEEHVGTKTA VQIRSHAQKF FSKVVRETNN GEVSSVKSIE IPPPRPKRKP 120 MHPYPRKLTI PVRNENLARE KAKSSDSLNL SHSETENQSP TSVLSALGSD ALGRADSSKQ 180 SESSSPVSSA VAENSGDLLH AKPSDFMLEQ RKSSPAQAYA SSISDNQACV KLEFFTQGND 240 YVKEHLVEAS STQHLKLFGQ TVLITDSHIS SSSTSSMEFS PQESECAPSP STIGAPAPFH 300 YVSGPNGSPR PNESVSSSFS PWGSSYASAA FSCTHVHNPI PTKGRALFDD KESDDKETQK 360 EGSSTGSNGE SVSAELSGDR NMEIEAQSSR SLVEEAGGRK LHSLFQRRAN FKRVKGFVPY 420 KRCLAERGIS SSTLTGEERE EPRTQLCL

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MLPSRDMISP DVGAPSPRSI QLEEQVSPAD EYAPKIRKAY TITKQRERWS EEEHKKFLEA  60
LKLHGRAWRR IEEHVGTKTA VQIRSHAQKF FSKVVRETNN GEVSSVKSIE IPPPRPKRKP  120
MHPYPRKLTI PVRNENLARE KAKSSDSLNL SHSETENQSP TSVLSALGSD ALGRADSSKQ  180
SESSSPVSSA VAENSGDLLH AKPSDFMLEQ RKSSPAQAYA SSISDNQACV KLEFFTQGND  240
YVKEHLVEAS STQHLKLFGQ TVLITDSHIS SSSTSSMEFS PQESECAPSP STIGAPAPFH  300
YVSGPNGSPR PNESVSSSFS PWGSSYASAA FSCTHVHNPI PTKGRALFDD KESDDKETQK  360
EGSSTGSNGE SVSAELSGDR NMEIEAQSSR SLVEEAGGRK LHSLFQRRAN FKRVKGFVPY  420
KRCLAERGIS SSTLTGEERE EPRTQLCL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231624.1	0.0	protein REVEILLE 1
TrEMBL	Q58JN2	0.0	Q58JN2_SOLPE; Putative At5g37260 (Fragment)
STRING	Solyc02g036370.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3185	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-46	MYB_related family protein