PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00118g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

YABBY

Protein Properties

Length: 190aa MW: 21129.1 Da PI: 9.4185

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00118g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	231.6	1.9e-71	9	167	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 ++sse+vCyv+CnfCntilavsvP + +f++vt+rCGhC++llsvn+ q l+ ++ ++ +l+++++n++ ++ Peinf101Scf00118g00003.1 9 TTSSERVCYVHCNFCNTILAVSVPCSNMFNIVTIRCGHCANLLSVNMGSLLQPLPLQDL-------QVIIKLQKQQSNVENASKA 86 6799*************************************************9994.......3444455555555555555 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+s+ + ++ e+ prv p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Peinf101Scf00118g00003.1 87 CGSSSSSKCNRFSAIHSPENEPRVTP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 167 55555555554445677788899888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.2E-74	11	167	IPR006780	YABBY protein
SuperFamily	SSF47095	8.51E-9	106	161	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.4E-5	115	161	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSNDMTSSTT SSERVCYVHC NFCNTILAVS VPCSNMFNIV TIRCGHCANL LSVNMGSLLQ 60 PLPLQDLQVI IKLQKQQSNV ENASKACGSS SSSKCNRFSA IHSPENEPRV TPIRPPEKRQ 120 RVPSAYNRFI KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLE SNKQAKLDHA 180 AGPHKSLGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ767669	1e-175	KJ767669.1 Nicotiana tabacum FAS protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234442.1	1e-105	PREDICTED: axial regulator YABBY 5-like isoform X1
Swissprot	Q9XFB0	8e-72	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J6KYN5	1e-104	A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRING	XP_009798278.1	1e-103	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-66	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]