PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00122g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 603aa    MW: 66883.2 Da    PI: 6.8437
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00122g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12435481455
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Peinf101Scf00122g00003.1 435 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHITELQ 481
                               799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-5647235IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.475431480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-18434496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-13434485No hitNo description
Gene3DG3DSA:4.10.280.102.0E-17435494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9435481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048738.42E-4540585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MGLGNLWSDE DKAMVAAVLG TKAFDYLMSS SVSAECSLMA MGSDENLQNK LSDLVECPNA  60
TNFSWNYAIF WQISRSKSGE LVLGWGDGCC REPKEGEESE ITRILNLRLE NEAQQRMRKR  120
VLQKLHMLFG GTDEDNYAFG LDRVTDTEMF FLASMYFSFP RGQGGPGKCF GSGKHVWLSD  180
VMKSSVDYCS RSFLMKSAGM QTIVLIPTDV GVVELGSVRS IPESFELVQS IKSCFSSFLS  240
LVRAKQAASV TVAAEKKDGN NSTFPSSFSS EQPNGTPRIF GQELNSACTP FREKLAVRKA  300
EDRSLEMYRN GNGNRAPFMN ARNGLRTTSW ASFGNVKPGN SVELYSPQAP ANNLREFVNG  360
GREEFRLNNF QHQKPATMQI DFSNSRPVIS PAHTVESEHS DIEASCKEDH AGPADEKRPR  420
KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAIAHITEL  480
QKKLRDMESE RERLGSTSRD ALASESPNSE TQNPPPDINI ESANDEVIVR VRCPLDTHPL  540
SRVVEAFKEA QVNVVESKLA ATNDTVFHTF VVKTSGSEQL TKEKLMAAVS GESNSLRPFS  600
PVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-28429491264Transcription factor MYC2
5gnj_B2e-28429491264Transcription factor MYC2
5gnj_E2e-28429491264Transcription factor MYC2
5gnj_F2e-28429491264Transcription factor MYC2
5gnj_G2e-28429491264Transcription factor MYC2
5gnj_I2e-28429491264Transcription factor MYC2
5gnj_M2e-28429491264Transcription factor MYC2
5gnj_N2e-28429491264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416424KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264739.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1J6J2V00.0A0A1J6J2V0_NICAT; Transcription factor bhlh13
STRINGXP_009770264.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]