PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00125g06032.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 226aa    MW: 25395.9 Da    PI: 4.9732
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00125g06032.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.6e-171462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd +l+ +++q+G+  +W + ++++g++R++k+c++rw++yl
  Peinf101Scf00125g06032.1 14 KGPWSPEEDAKLKAYIEQHGTCgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                              79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-22565IPR009057Homeodomain-like
PROSITE profilePS5129421.275966IPR017930Myb domain
SMARTSM007173.0E-131364IPR001005SANT/Myb domain
PfamPF002491.6E-151462IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-201591IPR009057Homeodomain-like
CDDcd001679.23E-111662No hitNo description
PROSITE profilePS500904.7746393IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.3E-76692IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRAPCCDKN SVKKGPWSPE EDAKLKAYIE QHGTCGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIL SLYISIGSSW PELPILQPIP YSNEEPRFND HASIRMLLMK  120
LGGKFSDDDN DDEKAMNEPP SGLEMLYDDM LNNKHATTLG GSLDLEDMNN LVFPLPPLDV  180
SNNEGHQHGT LLQGGALNEL RDLCTLLRNP NELVCSNICI FKVLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-141498789B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463820.11e-56myb-related protein Hv1
TrEMBLB9SX812e-57B9SX81_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002530600.13e-58(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-47myb domain protein 84