PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00128g00021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 233aa    MW: 26688.2 Da    PI: 9.3482
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00128g00021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.7e-1172146590
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                               +++++  ++  ++lp  fa+++g+++++  +++l de+ rsW+v l  r        ++G+  F kan +++gD+  F+l+++ s
  Peinf101Scf00128g00021.1  72 TIKPYIITNTVFYLPMAFAKSIGLINRN--EMILVDEKWRSWSVHL--R--------QTGTHFFMKANSVQVGDSYKFELINNgS 144
                               56888999999************99655..8***************..3........45888899***************98766 PP

                               EE CS
                        B3  89 ef 90 
                               ++
  Peinf101Scf00128g00021.1 145 DG 146
                               65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1161143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-1362143IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-967144No hitNo description
SMARTSM010194.9E-968156IPR003340B3 DNA binding domain
PfamPF023621.8E-970147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEKNQSGNFM PEVKKNNLET KSQVPGPRIS DKGQYFQEQI DLNIVTSDVT APKSQVTAST  60
SSDEANPYFI STIKPYIITN TVFYLPMAFA KSIGLINRNE MILVDEKWRS WSVHLRQTGT  120
HFFMKANSVQ VGDSYKFELI NNGSDGTKPI THFYCEYFFV SLKFRDTIIC RLSIVFEKLV  180
GKYSGKDDKH HRSHRHDKAK YSFSLSTGIA SYTHAMKDQE NPYKEPSDLK NPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454037.16e-38PREDICTED: B3 domain-containing protein REM10-like isoform X2
TrEMBLA0A1S3YPR51e-36A0A1S3YPR5_TOBAC; B3 domain-containing protein REM10-like isoform X2
STRINGXP_009781490.13e-36(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-09B3 family protein