PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00128g01013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 184aa    MW: 21418.1 Da    PI: 10.0663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00128g01013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-131184883
                              -HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3  8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                              ++v++ +  +lpkkfa+ +   ++k++   l+++de+ rs +++l  + ++ r y+ ++GW++Fv++  Lk gD + F+
  Peinf101Scf00128g01013.1 11 AYVNTPC-QSLPKKFATVNgvTNVKKC--PLIIRDERQRSRDLTL--CSSKTRvYITGSGWRKFVDDVCLKKGDYIQFE 84
                              5666666.89******99955445555..5***************..77777747777********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-10884IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-101685IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-101784IPR003340B3 DNA binding domain
CDDcd100171.46E-71984No hitNo description
Gene3DG3DSA:2.40.330.108.5E-5132179IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKNMSCLMMC AYVNTPCQSL PKKFATVNGV TNVKKCPLII RDERQRSRDL TLCSSKTRVY  60
ITGSGWRKFV DDVCLKKGDY IQFETPMQKF QGKSIIFLSW VKILDLILMK HSGTESRVQH  120
QEKAFPNVES AKDTHLPHFF GTIKPYNISM HILYVPRQFA LKNNLNNRRC MITITDEKWS  180
WSCN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-08B3 family protein