PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00128g01015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 224aa    MW: 25733.4 Da    PI: 8.5703
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00128g01015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-1922104589
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                               +++++ l++g l +p +fa+++g+ + ++ +l+++de+ rsW++kl  + ++ r+++++GW++Fv + g+kegD ++F+ + + +
  Peinf101Scf00128g01015.1  22 TIRPYCLSRGFLFIPAQFANANGLTN-KKCDLIIRDERQRSWDLKL--SSGKTRVYIGNGWRKFVADVGIKEGDRIMFEIVTSgE 103
                               678999****************8875.5569***************..99999**************************775434 PP

                               E CS
                        B3  89 e 89 
                                
  Peinf101Scf00128g01015.1 104 A 104
                               4 PP
2B337.93.1e-121542143498
                               SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                +++++d + rsW+ +l    +++++++++GW eF+ an LkegD ++F+ ++ +++++ ++++ 
  Peinf101Scf00128g01015.1 154 CEIIIRD-ERRSWTCNL--FSCGRKTFIGSGWHEFCIANCLKEGDRLIFEIVS-NGEKPIFRLRG 214
                               3688788.679******..8999999************************887.66678888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-1916106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-1917104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3118115IPR003340B3 DNA binding domain
SMARTSM010194.2E-1319111IPR003340B3 DNA binding domain
PfamPF023624.9E-1722103IPR003340B3 DNA binding domain
CDDcd100173.75E-152697No hitNo description
SMARTSM010195.5E-8122216IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-14130213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-12136213IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-10153213IPR003340B3 DNA binding domain
CDDcd100175.04E-9154213No hitNo description
PROSITE profilePS5086310.616155215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MQSSHAATDH HKPLGETHFE CTIRPYCLSR GFLFIPAQFA NANGLTNKKC DLIIRDERQR  60
SWDLKLSSGK TRVYIGNGWR KFVADVGIKE GDRIMFEIVT SGEAPQWKFK VVTNGETPMK  120
KFQKASEEMH LSHPHFICTI QPYSLSNCLN DRKCEIIIRD ERRSWTCNLF SCGRKTFIGS  180
GWHEFCIANC LKEGDRLIFE IVSNGEKPIF RLRGNSTSPE ENIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549278.13e-75PREDICTED: B3 domain-containing protein REM17-like isoform X7
TrEMBLA0A1U8EQ387e-74A0A1U8EQ38_CAPAN; B3 domain-containing protein REM17-like isoform X7
STRINGXP_009781505.17e-73(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.17e-22B3 family protein