PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00138g00002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 445aa    MW: 50303.7 Da    PI: 5.9051
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00138g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.94.3e-97604422373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 
                               ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+   +++k l+++ + +++ ++ ++  l  f+
  Peinf101Scf00138g00002.1  60 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTTNLNYSMDtHKFSIIELASFV 142
                               79****************************************************..666666655555544436667777777** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167
                               +++P+++f++ +aN aIleaveg + +Hi+Df++++++Q p+L++a+++R egpp +++T+ g  e        ++ee+g +L +
  Peinf101Scf00138g00002.1 143 DLTPWHRFGFTAANGAILEAVEGYSIIHIVDFSLTHCMQIPTLIEAISTRLEGPPLVKLTVAGVTEDLppmLDLSYEELGAKLVN 227
                               ************************************************************9999666688888999********* PP

                      GRAS 168 fAeelgvpfefnvl.......vakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsles...erdevLklvkslsP 236
                               fA++ +v +ef+v+        ++      +e+Lrv++      gEal+Vn++++lh++++e++s++s    r+ +Lk+++s+ P
  Peinf101Scf00138g00002.1 228 FARSRNVMMEFRVIpssssdgFSNV-----IEQLRVQNlirhenGEALVVNCHMMLHYIPEETLSITSvssFRTMFLKAIRSIDP 307
                               *************987644444444.....55555555555556********************999877789************ PP

                      GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                               k+vv+v+++ad +s++++ r+ +a++y +  +d++++ lp+ s++r+++E+  + ++i+nv+a+eg +r er e +++W +r+++
  Peinf101Scf00138g00002.1 308 KIVVLVDEDADFTSNNLVCRLRSAFNYLWIPYDTVDTFLPKGSKQRQWYEAD-ICWKIENVIAHEGLQRLERLEPKSQWVQRMRN 391
                               ****************************************************.******************************** PP

                      GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               a F++  +se+a+ ++k +l +++  g+ ++ +++ lvl+Wk++++v+++aW
  Peinf101Scf00138g00002.1 392 ANFRSSGFSEEAVLEVKNMLDEHA-AGWGLKRDEEDLVLTWKGHNVVFATAW 442
                               ************************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.19133424IPR005202Transcription factor GRAS
PfamPF035141.5E-9460442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MMQFTESLPL PPSLHQVSPF SNLMMNKNND NHQIQQRARS WPGFPTSKNL GTIGDANCME  60
QLLVHCANAI ESNDATLAQQ ILWVLNNIAP PDGDSNQRLT CGFLRALIVR AAKIGTCKLL  120
TTNLNYSMDT HKFSIIELAS FVDLTPWHRF GFTAANGAIL EAVEGYSIIH IVDFSLTHCM  180
QIPTLIEAIS TRLEGPPLVK LTVAGVTEDL PPMLDLSYEE LGAKLVNFAR SRNVMMEFRV  240
IPSSSSDGFS NVIEQLRVQN LIRHENGEAL VVNCHMMLHY IPEETLSITS VSSFRTMFLK  300
AIRSIDPKIV VLVDEDADFT SNNLVCRLRS AFNYLWIPYD TVDTFLPKGS KQRQWYEADI  360
CWKIENVIAH EGLQRLERLE PKSQWVQRMR NANFRSSGFS EEAVLEVKNM LDEHAAGWGL  420
KRDEEDLVLT WKGHNVVFAT AWVPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-493144461474Protein SHORT-ROOT
5b3h_B2e-49284444420Protein SHORT-ROOT
5b3h_E2e-49284444420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560964.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8FZ100.0A0A1U8FZ10_CAPAN; Scarecrow-like protein 32
TrEMBLA0A2G3AB420.0A0A2G3AB42_CAPAN; scarecrow-like protein 32
STRINGXP_009607182.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein