PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00145g21009.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YC

Protein Properties

Length: 279aa MW: 30808.1 Da PI: 4.9741

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00145g21009.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.3	1.5e-17	11	85	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ +++++++ ++fdfl d+v r Peinf101Scf00145g21009.1 11 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKQCIQSFNVFDFLKDVVSR 85 8***********************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.0E-22	11	84	IPR009072	Histone-fold
Pfam	PF00808	1.0E-15	11	70	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.39E-19	17	86	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MRTRQKGAYE ARIKKIMQAD EDVGKIAMAV PLLVSKALEL FLQDLCDRTY EITLKKGAKT 60 MNSFHLKQCI QSFNVFDFLK DVVSRVPDLG GSDAGAESAT KRRKIAEDDH GSDDDIKRSH 120 MDETAHTSGS GRGRGRGRGR GRGRGARALE RGDSNVRCEK LEDPADVSHQ NNEKQKQNDK 180 SMDHVAEPPA DSKNISAGRS PEGPARNFDL NIDLNESVET TAIPAEAPSS STFPPREVKH 240 EEIPGWSLSE MEKMAIDPIQ LASLNNGLDE EDEDYDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-18	11	71	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	143	RGRGRGRGRGR
2	135	144	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-35	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016433075.1	1e-139	PREDICTED: dr1-associated corepressor-like
Refseq	XP_018628198.1	1e-139	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A1S3WZD0	1e-137	A0A1S3WZD0_TOBAC; dr1-associated corepressor-like
STRING	XP_009607736.1	1e-143	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	1e-53	NF-YC family protein