PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00146g03028.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 231aa    MW: 27029.4 Da    PI: 5.9289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00146g03028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-151101881099
                               HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                        B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                +k+g + +p  f+ ++ +g+++   +  +  ++g++W+vkl  ++++    +++GW eF+++ +L++g ++vF+++g++ef   
  Peinf101Scf00146g03028.1 110 GFKNG-IKIPIGFL-KYlEGQEKH--EHAILRRNGKEWQVKL--NGHR----FEEGWAEFAEERDLQVGHMLVFRHEGDMEF--E 182
                               55555.99******.555766433..5777789*********..7777....9***********************999999..9 PP

                               EEEE-S CS
                        B3  94 vkvfrk 99 
                               v++f++
  Peinf101Scf00146g03028.1 183 VSIFDS 188
                               999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.02187IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-8465IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-91265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-2297191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-2097191IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.266100189IPR003340B3 DNA binding domain
CDDcd100171.65E-16101187No hitNo description
SMARTSM010191.5E-14103189IPR003340B3 DNA binding domain
PfamPF023622.0E-12112188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFRVLKSVVI IFLQKIPKAF FKYLDGHIQE HAILRSAGKE WRVKVNGQLL EDGWEKFAED  60
HDLQQTQQKN QSSTSSHHKR LNYLNEEADK DMPLDLPPKN PHFFKPIVPG FKNGIKIPIG  120
FLKYLEGQEK HEHAILRRNG KEWQVKLNGH RFEEGWAEFA EERDLQVGHM LVFRHEGDME  180
FEVSIFDSSQ CNTEYVQHQQ EEEEETAKKS DMEEKAKIIS SEEAFPNVEA A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168737.18e-52PREDICTED: B3 domain-containing protein REM10-like isoform X6
RefseqXP_018623217.14e-52PREDICTED: B3 domain-containing protein REM5-like isoform X1
RefseqXP_018623218.12e-52PREDICTED: B3 domain-containing protein REM5-like isoform X2
TrEMBLA0A2G3BQR56e-52A0A2G3BQR5_CAPCH; Uncharacterized protein
STRINGXP_009792889.12e-50(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-28B3 family protein