PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00146g04041.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 312aa MW: 35242.9 Da PI: 9.1346

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00146g04041.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.1	4.7e-55	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePwdLp k+k + kewyfFs rd+ky+tg r+nrat++gyWk+ Peinf101Scf00146g04041.1 9 LPPGFRFHPTDEELITYYLVNKIADANFTG-RAIADVDLNKCEPWDLPGKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKT 92 79***********************999.89***********999999*************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkdke++++ ++elvg+kktLvfykgrap+gek++Wvmheyr+ Peinf101Scf00146g04041.1 93 TGKDKEIFNSkTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 136 ****9867888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-64	6	158	IPR003441	NAC domain
PROSITE profile	PS51005	61.241	9	158	IPR003441	NAC domain
Pfam	PF02365	8.2E-29	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEESKEESLP PGFRFHPTDE ELITYYLVNK IADANFTGRA IADVDLNKCE PWDLPGKAKM 60 GGKEWYFFSL RDRKYPTGVR TNRATNTGYW KTTGKDKEIF NSKTSELVGM KKTLVFYKGR 120 APRGEKSNWV MHEYRIRSKS SYRTTKQDEW VVCRIFQKSG GMKKYPSNNH SRAVVNPYSL 180 EMNQNAMSSQ MMQPDHHAFQ IAMGRSYINH APNMNFPIQP QMTYNMGGSS SGGGDNFFSI 240 SGLNLNLGGG VATSQPVLRP MPLPPPPPPQ VMNPQDVTSM MVNCPITSEA GYGVEMNNAN 300 YCADLDNYWA TY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	8	164	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	8	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	8	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	8	164	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	8	164	19	174	NAC domain-containing protein 19
3swm_B	2e-56	8	164	19	174	NAC domain-containing protein 19
3swm_C	2e-56	8	164	19	174	NAC domain-containing protein 19
3swm_D	2e-56	8	164	19	174	NAC domain-containing protein 19
3swp_A	2e-56	8	164	19	174	NAC domain-containing protein 19
3swp_B	2e-56	8	164	19	174	NAC domain-containing protein 19
3swp_C	2e-56	8	164	19	174	NAC domain-containing protein 19
3swp_D	2e-56	8	164	19	174	NAC domain-containing protein 19
4dul_A	2e-56	8	164	16	171	NAC domain-containing protein 19
4dul_B	2e-56	8	164	16	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF510216	0.0	AF510216.1 Petunia x hybrida nam-like protein 19 (NH19) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601216.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
Refseq	XP_016457772.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A1S3Z0W3	1e-180	A0A1S3Z0W3_TOBAC; protein CUP-SHAPED COTYLEDON 1-like
STRING	XP_009601216.1	1e-180	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-105	NAC domain containing protein 38