PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00149g01007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 239aa MW: 27326.8 Da PI: 9.3921

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00149g01007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.5e-21	100	159	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ Peinf101Scf00149g01007.1 100 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITLQLgkygKIEGKNVFYWFQNHKARERQ 159 7***************99************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.37E-12	95	165	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.074	95	160	IPR001356	Homeobox domain
SMART	SM00389	9.0E-7	97	164	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-18	100	159	IPR001356	Homeobox domain
CDD	cd00086	3.66E-5	100	161	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-7	101	159	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MYMGSSAGSL SMKVHQFTRG FLEHNDAATP SLSLGCKRLR PLAPKLTTNN NDSINVTPPP 60 FDLKSFIRPE SCSNTSPGKL SFINDDKKES SQVESHPGGT RWNPTQEQIG ILEMLYRGGM 120 RTPNAQQIEQ ITLQLGKYGK IEGKNVFYWF QNHKARERQK QKRNSMGLSQ SPRTPPAIVT 180 SPLTFDTRGE VVRDEDSPYK RKCRTWTFEY LEEEEKRNCR EDASDRTLEL FPLHPEGMR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU359006	0.0	EU359006.1 Petunia x hybrida WOX4 (WOX4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016487428.1	1e-144	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	2e-77	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	C0IN09	1e-177	C0IN09_PETHY; WOX4
STRING	XP_009613514.1	1e-143	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	7e-80	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]