PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00167g09003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 182aa    MW: 20229 Da    PI: 11.1305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00167g09003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-0982122954
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Peinf101Scf00167g09003.1  82 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 122
                               699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.12373122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1378131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1478132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-1479128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-683122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-796127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MPSTISFTHS PPIHQNPNFL SNSSTSGATF SSHSMNRTNM AAMREMIFRI AAMQPINIDP  60
ESVKPPKRRN VKISSDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS MLDEAIHYVK  120
FLKNQVQSLE RAGATRPSTA TTGLGFPVPM ALSGNYSFPV SSKGYHQSST HHHQTIQQYA  180
DV
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571464.14e-92PREDICTED: transcription factor HEC2-like
SwissprotQ9SND44e-46HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2G2Y0E03e-92A0A2G2Y0E0_CAPAN; Transcription factor HEC1
STRINGPGSC0003DMT4000205581e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]