PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00172g03001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Dof
Protein Properties Length: 276aa    MW: 31290.3 Da    PI: 4.2081
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00172g03001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1208.5e-382180362
                    zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                              e+a +cprC s+ntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk+++s+
  Peinf101Scf00172g03001.1 21 EQAPNCPRCASSNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKSRRSR 80
                              57789***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-27873IPR003851Zinc finger, Dof-type
PfamPF027011.9E-322278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6492478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLAYPSRPMI MMERKRKSNF EQAPNCPRCA SSNTKFCYYN NYSLSQPRYF CKACRRYWTK  60
GGSLRNVPVG GGCRKSRRSR SARKDDNTLQ TPSPDLSSNE AAGADIDLAD VFTKYLNQGT  120
ANSIDHQDIL QESPLTDQDY SSLGASYDNS PSSDSLIPNS FETESQLDET IIMGNYNQDY  180
PCGFLQEEQL HEDTQDFLDL DPSFLEMQSL LGDGMMGQAA EFDYNASFTW QPMMQFQDFG  240
TTLEDDQLKT STEYLASDNN NCSSFDLPSY ENFTRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755167e-93HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266430.11e-154PREDICTED: dof zinc finger protein DOF3.2-like
SwissprotP683492e-40DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLA0A314L0R91e-153A0A314L0R9_NICAT; Dof zinc finger protein dof3.5
STRINGXP_009628285.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.16e-39Dof family protein