PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00174g02004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 217aa    MW: 24806.7 Da    PI: 7.4216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00174g02004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037133155123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y C+ C+k F++   L  H  +H
  Peinf101Scf00174g02004.1 133 YICETCNKAFRSYQALGGHRASH 155
                               89**********99999998887 PP
2zf-C2H211.40.001182203223
                               EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                               +Cp C ++Fs+   L  H r+H
  Peinf101Scf00174g02004.1 182 ECPVCYRVFSSGQALGGHKRSH 203
                               5******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.4E-4126157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.14E-8133203No hitNo description
PfamPF139122.2E-11133157IPR007087Zinc finger, C2H2
SMARTSM003550.062133155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305133160IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
PfamPF139122.8E-12181203IPR007087Zinc finger, C2H2
SMARTSM003553181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85181203IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDLLQDRESE TESLPYPTQC KRSKRIINSR ISDTHYNQFL SLERRRRQQQ QLYGKITEFP  60
FVESEPVSSI SDTSPDEDVA NCLMMLSRDE WMTQENEVIN DSASYDDDVK TEEKTEDSVV  120
VKVTKTRRGR GKYICETCNK AFRSYQALGG HRASHKKIKV SINETTNNGN VESEVQKDKI  180
RECPVCYRVF SSGQALGGHK RSHGIGVAAT NLINIIY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0065970.0AB006597.1 Petunia x hybrida mRNA for ZPT2-10, complete cds.
GenBankAB0351320.0AB035132.1 Petunia x hybrida gene for C2H2 zinc-finger protein ZPT2-10, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545381.12e-59PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2021e-37ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLO220821e-136O22082_PETHY; C2H2 zinc-finger protein ZPT2-10
STRINGSolyc01g090840.2.12e-58(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-37C2H2-like zinc finger protein