PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00191g02005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 415aa MW: 45943.3 Da PI: 8.066

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00191g02005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.5e-09	283	330	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peinf101Scf00191g02005.1 283 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 330 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.07E-10	277	334	No hit	No description
SuperFamily	SSF47459	5.89E-17	277	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	279	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	279	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	283	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	285	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MEKDYFINSG IPPPLQFEPT MSFPSWNSNW DHHSSDHQFT PFDSTLNSIV TSPYINNNTN 60 NSTNNSCYTT TPNNSPPKLH IPSMMGKDNL PNLESSLPLN PLSTDPGFAQ RAAKFSCFGS 120 RSFNSITTSP LGLNNNAELS HRSTQQFKNG KLPRVSSSPA LKQSGSLLQI KNLSKLCNSN 180 ESGSEPSGET GSKTPTELNS RKRKSVSRVK TKEDSPANGN MGGEVDDSAR AKRCKQVPEG 240 NETENGIVNM EESKDNEDEK EAKPEPPKDY IHVRARRGQA TDSHSLAERV RREKISERMK 300 LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL SSVNSSLDFP VENLLPKDIC 360 QPNGALPQPV LPSYQQPRQP PQMHTDIPSA ALSQCSMGFT QNPNKDLALQ RFPGW

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MEKDYFINSG IPPPLQFEPT MSFPSWNSNW DHHSSDHQFT PFDSTLNSIV TSPYINNNTN  60
NSTNNSCYTT TPNNSPPKLH IPSMMGKDNL PNLESSLPLN PLSTDPGFAQ RAAKFSCFGS  120
RSFNSITTSP LGLNNNAELS HRSTQQFKNG KLPRVSSSPA LKQSGSLLQI KNLSKLCNSN  180
ESGSEPSGET GSKTPTELNS RKRKSVSRVK TKEDSPANGN MGGEVDDSAR AKRCKQVPEG  240
NETENGIVNM EESKDNEDEK EAKPEPPKDY IHVRARRGQA TDSHSLAERV RREKISERMK  300
LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL SSVNSSLDFP VENLLPKDIC  360
QPNGALPQPV LPSYQQPRQP PQMHTDIPSA ALSQCSMGFT QNPNKDLALQ RFPGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	204	SRKRKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621298.1	1e-175	PREDICTED: transcription factor bHLH62-like isoform X2
Refseq	XP_016447869.1	1e-175	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	2e-80	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A1S3Y744	1e-173	A0A1S3Y744_TOBAC; transcription factor bHLH62-like
STRING	XP_009621297.1	1e-174	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-67	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]