PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00200g01010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 198aa    MW: 22615.9 Da    PI: 10.4186
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00200g01010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.31.8e-54151421128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka
  Peinf101Scf00200g01010.1  15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-NIIAEVDLYKFDPWELPSKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 98 
                               79****************************.89***************99999******************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+dk++++   +++vg+kk Lvfy+g+ pkg kt+Wvmheyrl
  Peinf101Scf00200g01010.1  99 TGTDKPIFTCnVTRKVGVKKALVFYRGKPPKGIKTNWVMHEYRL 142
                               *******99646778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-618147IPR003441NAC domain
PROSITE profilePS5100556.59615162IPR003441NAC domain
PfamPF023656.7E-2916142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MENTGLMSSS NHLHLPPGFR FHPTDEELVV HYLKKKAASA PLPVNIIAEV DLYKFDPWEL  60
PSKANFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIFTCNV TRKVGVKKAL  120
VFYRGKPPKG IKTNWVMHEY RLVDNNSSLT KKGSLRCSSG NGQGRFNGGY DMFTYNAIFI  180
NKCFRAKSKH ISVERIKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-661114413144NO APICAL MERISTEM PROTEIN
1ut4_B2e-661114413144NO APICAL MERISTEM PROTEIN
1ut7_A2e-661114413144NO APICAL MERISTEM PROTEIN
1ut7_B2e-661114413144NO APICAL MERISTEM PROTEIN
3swm_A3e-661114416147NAC domain-containing protein 19
3swm_B3e-661114416147NAC domain-containing protein 19
3swm_C3e-661114416147NAC domain-containing protein 19
3swm_D3e-661114416147NAC domain-containing protein 19
3swp_A3e-661114416147NAC domain-containing protein 19
3swp_B3e-661114416147NAC domain-containing protein 19
3swp_C3e-661114416147NAC domain-containing protein 19
3swp_D3e-661114416147NAC domain-containing protein 19
4dul_A2e-661114413144NAC domain-containing protein 19
4dul_B2e-661114413144NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098750.0AF509875.1 Petunia x hybrida nam-like protein 12 (NH12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780447.11e-102PREDICTED: NAC transcription factor 25-like
RefseqXP_016488493.11e-102PREDICTED: NAC transcription factor 25-like
SwissprotA2YMR03e-86NAC10_ORYSI; NAC transcription factor ONAC010
SwissprotQ8GY427e-87NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A1S4BHZ51e-101A0A1S4BHZ5_TOBAC; NAC transcription factor 25-like
TrEMBLA0A1U7WKF91e-101A0A1U7WKF9_NICSY; NAC transcription factor 25-like
STRINGXP_009780447.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-89NAC domain containing protein 25