PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00229g02002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

GRAS

Protein Properties

Length: 721aa MW: 79479.5 Da PI: 6.3099

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00229g02002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	276.4	8.8e-85	360	720	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++++++ e + +g++++aq +Larl+++ sp g+p++R+a+yf+eAL+ + + ++ lpp++ ++ + + ++ a+k fsev Peinf101Scf00229g02002.1 360 DQIFQASELLLAGHFSNAQMILARLNQQLSPIGKPFKRAAFYFKEALQLPFLL--PCTSTFLPPRSPTPFDCVLKMDAYKSFSEV 442 57899999999***********************************99998..566666899999999*********** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 sP+++f ++t Nq Ilea+ er+HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+ ++e L++fA+ Peinf101Scf00229g02002.1 443 SPLIQFMNFTSNQSILEALGDVERIHIIDFDIGFGAQWSSFMQELPSSNRKATSLKITAFASPSTHHSVEIAIMHESLTQFANDA 527 ********************************************************************************* PP GRAS 173 gvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 g++fe +v+ ++++ + l++Lr + Ea+a+n+ + + + +++L+ +k+lsPk++v e+ +++++ ++ + Peinf101Scf00229g02002.1 528 GIRFELEVINLDTFDpkSYPLSSLRSSDCEAIAINFPIWSISSC--LFA----FPSLLHYMKQLSPKIIVSLERGCERTELPLKH 606 ****97776651145789999999****99555444..344....456************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 ++l+al+yy l+ s++a + e +k+E+ ll ++i+n+v + ++ ++ +Wr+ + +aGF+pv++s+ ++ qa+++ Peinf101Scf00229g02002.1 607 HLLHALQYYEILLASIDAA-NVTPEIGKKIEKSLLLPSIENMVLGRLRS----PDRMPQWRNLFASAGFSPVAFSNLTEIQAECV 686 ************665.45779999************99988....9999************************ PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++ g++ve+++ slvl+Wk+++L+s+ Wr Peinf101Scf00229g02002.1 687 VKRTQVGGFHVEKRQSSLVLCWKQQELLSALTWR 720 *******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.256	332	700	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-82	360	720	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MIAIPQGAKG VLGVSSFMPS ISSEEQICKK DANFARNDPQ ICKKDGNFAR NEPQICKKEG 60 NFTRNEPVSV LDTRSPSPSS SSCSYAGKVE GQKEEPVMEL QPFPLVGLEP EKCSLGFGDL 120 DNLLPELAGA DQTLLRWISG DMEDPSVSLK QLLLGGNANG FHGSSGFEAS AAGSLVHTDN 180 VSFSGSDVSL NANIEKIGSV IDSNGRPSNG FDYLNANLYA KSLPLPPASS FQEQKLGQKP 240 QSFSPNQALF QNASYGNMFD SSSYDDTNQE QPPSKRHNSG TLGSSVGGLL PKVPFFDPSG 300 DLSMRRQLLG EMHQHFNLLP PQQFQPKPLI VPKLEAACGG GNGSLMVPRH QQQEQQFIYD 360 QIFQASELLL AGHFSNAQMI LARLNQQLSP IGKPFKRAAF YFKEALQLPF LLPCTSTFLP 420 PRSPTPFDCV LKMDAYKSFS EVSPLIQFMN FTSNQSILEA LGDVERIHII DFDIGFGAQW 480 SSFMQELPSS NRKATSLKIT AFASPSTHHS VEIAIMHESL TQFANDAGIR FELEVINLDT 540 FDPKSYPLSS LRSSDCEAIA INFPIWSISS CLFAFPSLLH YMKQLSPKII VSLERGCERT 600 ELPLKHHLLH ALQYYEILLA SIDAANVTPE IGKKIEKSLL LPSIENMVLG RLRSPDRMPQ 660 WRNLFASAGF SPVAFSNLTE IQAECVVKRT QVGGFHVEKR QSSLVLCWKQ QELLSALTWR 720 C

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MIAIPQGAKG VLGVSSFMPS ISSEEQICKK DANFARNDPQ ICKKDGNFAR NEPQICKKEG  60
NFTRNEPVSV LDTRSPSPSS SSCSYAGKVE GQKEEPVMEL QPFPLVGLEP EKCSLGFGDL  120
DNLLPELAGA DQTLLRWISG DMEDPSVSLK QLLLGGNANG FHGSSGFEAS AAGSLVHTDN  180
VSFSGSDVSL NANIEKIGSV IDSNGRPSNG FDYLNANLYA KSLPLPPASS FQEQKLGQKP  240
QSFSPNQALF QNASYGNMFD SSSYDDTNQE QPPSKRHNSG TLGSSVGGLL PKVPFFDPSG  300
DLSMRRQLLG EMHQHFNLLP PQQFQPKPLI VPKLEAACGG GNGSLMVPRH QQQEQQFIYD  360
QIFQASELLL AGHFSNAQMI LARLNQQLSP IGKPFKRAAF YFKEALQLPF LLPCTSTFLP  420
PRSPTPFDCV LKMDAYKSFS EVSPLIQFMN FTSNQSILEA LGDVERIHII DFDIGFGAQW  480
SSFMQELPSS NRKATSLKIT AFASPSTHHS VEIAIMHESL TQFANDAGIR FELEVINLDT  540
FDPKSYPLSS LRSSDCEAIA INFPIWSISS CLFAFPSLLH YMKQLSPKII VSLERGCERT  600
ELPLKHHLLH ALQYYEILLA SIDAANVTPE IGKKIEKSLL LPSIENMVLG RLRSPDRMPQ  660
WRNLFASAGF SPVAFSNLTE IQAECVVKRT QVGGFHVEKR QSSLVLCWKQ QELLSALTWR  720
C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-27	364	719	25	378	Protein SCARECROW
5b3h_A	7e-27	364	719	24	377	Protein SCARECROW
5b3h_D	7e-27	364	719	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF481952	0.0	AF481952.1 Petunia x hybrida hairy meristem (HAM) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019252370.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	Q8LL10	0.0	Q8LL10_PETHY; Hairy meristem
STRING	XP_009803487.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-100	GRAS family protein