PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00236g05001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 315aa    MW: 35408.2 Da    PI: 4.5491
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00236g05001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28e-081449133
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...T CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...k 33
                              rgrWT+eEde l +++   G g+W++ ++      k
  Peinf101Scf00236g05001.1 14 RGRWTAEEDETLTNYILTNGEGSWRSLPKNADlarK 49
                              8*************************9998875543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-9548IPR009057Homeodomain-like
SuperFamilySSF466896.24E-7849IPR009057Homeodomain-like
PROSITE profilePS500906.922948IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDETLTNYIL TNGEGSWRSL PKNADLARKG ALKQIKRRVG  60
RTSRSTMMRN RKSKNSAVSS LSMPKQLKES SEPLNATVPI MPSTPNSEKE ALSSTISSWL  120
DGNNAMDSMQ KEVANIAAPN PLMESREAHS SLSSDGMEWL EEIMPLVIDD QDMDPNFIFT  180
CLENRQGESA VKVTEEADNN FLNTSKINER DHNNRESSEA AVSINIHDKQ VHEKSNETSS  240
LMEDEGTFDQ WDWKEITHDG GNVWPWDDNN SLQLWDSTTD DTGFLQNCIN EATVEMESVH  300
CENQKHSALV AWLLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157LKQIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246268.11e-91PREDICTED: transcription factor MYB12-like
TrEMBLA0A1J6JAW13e-90A0A1J6JAW1_NICAT; Transcription factor myb12
STRINGXP_009622107.12e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-23myb domain protein 111