PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00237g00015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 227aa    MW: 26054.3 Da    PI: 9.1736
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00237g00015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.36.8e-2054139290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                                Yn+YA   GF vrk +++++ rn+e t+  f Cs+egk+ e+++  +++ r+r   r+gC a++k k + +g+wev ++  eHn
  Peinf101Scf00237g00015.1  54 AYNSYAVAKGFGVRKGAKTYN-RNNELTRCLFLCSCEGKSPENSNY-QERLRQRLGYRCGCMARIKFKIS-NGVWEVFEICDEHN 135
                               5****************9999.5556****************9999.99999****************99.************** PP

                      FAR1  87 Hela 90 
                               H++ 
  Peinf101Scf00237g00015.1 136 HPMI 139
                               *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.5E-1754139IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEASLALNKN FVYEDLNVND QDCPAVVHTV SNINNDFAFK IGMKFNTKDE SYEAYNSYAV  60
AKGFGVRKGA KTYNRNNELT RCLFLCSCEG KSPENSNYQE RLRQRLGYRC GCMARIKFKI  120
SNGVWEVFEI CDEHNHPMIE ENLRHFIPSG RKLTDTSIEP SSRINDQVLD PVKKKGRGNG  180
YGRLKPKIEQ RKKKAPQKTF KARATEQHDQ ESSRLGFELY GDSNTSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172193KKKGRGNGYGRLKPKIEQRKKK
2173184KKGRGNGYGRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266793.15e-79PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3ZUA71e-74A0A1S3ZUA7_TOBAC; Uncharacterized protein
STRINGXP_009628526.19e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1726931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.18e-14FAR1-related sequence 10